Resources - Cheatsheets

Cheatsheets

General Programming Cheatsheets

• Python Cheatsheet
  A detailed Python reference covering syntax, data structures, functions, and libraries.

• RStudio Cheatsheets
  Includes cheat sheets for R, ggplot2, dplyr, tidyr, shiny, and other R packages.

• Git Cheatsheet
  Quick reference for Git commands and workflows.

• Markdown Cheatsheet
  A handy guide for writing Markdown syntax.

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R Programming and Data Visualisation

General R Cheatsheets

• ggplot2 Cheatsheet
  A guide for creating data visualisations with ggplot2 in R.

• dplyr Cheatsheet
  Reference for data manipulation functions in R.

• R Markdown Cheatsheet
  Tips for creating reproducible reports using R Markdown.

• RStudio Shortcuts
  Keyboard shortcuts to enhance productivity in RStudio.

Color Palettes for R Visualisations

• Top R Color Palettes
  Examples include viridis, RColorBrewer, wesanderson, and ggsci.

• R Graph Gallery
  A collection of graph examples with customisation tips for R visualisations.

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Linux and Command-Line Tools

• Unix Command Cheatsheet
  Quick reference for common Unix/Linux commands.

• Bioawk Cheatsheet
  Commands and usage examples for processing biological data with Bioawk.

• Bash Scripting Cheatsheet
  Handy guide for writing Bash scripts and automating tasks.

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Bioinformatics-Specific Cheatsheets

• Bioconductor Cheatsheet
  Guide to using Bioconductor packages in R for bioinformatics.

• FASTQ File Format Guide
  Quick guide to understanding and interpreting FASTQ files.

• Nextflow Cheatsheet
  Quick reference for building workflows with Nextflow.

• Snakemake Cheatsheet
  Guide to creating reproducible workflows with Snakemake.

• Genome Analysis Toolkit (GATK) Cheatsheet
  A summary of GATK commands and workflows for variant calling.

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Data Analysis and Visualisation

• Pandas Cheatsheet
  Reference for data manipulation and analysis with Pandas in Python.

• Matplotlib Cheatsheet
  Visualisation guide for Matplotlib in Python.

• Seaborn Cheatsheet
  Reference for statistical data visualisation using Seaborn.

• Tableau Shortcuts
  Productivity tips for Tableau users.

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Machine Learning and Statistics

• Scikit-learn Cheatsheet
  Overview of machine learning algorithms in Scikit-learn.

• TensorFlow Cheatsheet
  Quick guide to TensorFlow’s key features and APIs.

• Statistics with R Cheatsheet
  Summary of statistical methods and their implementation in R.

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General Coding and Tools

• Regex Cheatsheet
  Comprehensive guide to regular expressions (Regex).

• Docker Cheatsheet
  Reference for Docker commands and container management.

• Singularity Cheatsheet
  Quick start guide for working with Singularity containers.

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